PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486346.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 157aa    MW: 17421.7 Da    PI: 6.9336
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.87.6e-5916111297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfedyv+plk+yl+kyr++eg+
  XP_004486346.1  16 REQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYRDMEGD 110
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_004486346.1 111 K 111
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-5412121IPR009072Histone-fold
SuperFamilySSF471131.49E-4118121IPR009072Histone-fold
PfamPF008082.8E-282185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-204967No hitNo description
PROSITE patternPS0068505268IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-206886No hitNo description
PRINTSPR006151.2E-2087105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAESDNESGG GQTVCREQDR FLPIANVSRI MKKALPANAK ISKEAKETVQ ECVSEFISFI  60
TGEASDKCQK EKRKTINGDD LLWAMTTLGF EDYVDPLKIY LHKYRDMEGD KTSIIGRTDH  120
RDDGNVAAVV SSSMIIMMGH NIYGSGTGSP SSRRTHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4916106292Transcription factor HapC (Eurofung)
4g92_B8e-4916106292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182861e-146JQ918286.1 Medicago truncatula nuclear transcription factor Y subunit B13 (NF-YB13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486346.11e-116PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233102e-70NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLI3TAX18e-81I3TAX1_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA15G12570.13e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-72nuclear factor Y, subunit B3